Cannot install torch-geometric via requirement.txt
mingloo opened this issue · comments
The example requirement.txt is as below:
torch==1.3.1
torch-scatter==1.4.0
torch-sparse==0.4.3
torch-cluster==1.4.5
torch-geometric==1.3.2
Cannot successfully install the above packages via pip install -r requirement.txt
Looking in indexes: https://pypi.tuna.tsinghua.edu.cn/simple
Collecting torch==1.3.1 (from -r requirement.txt (line 1))
Downloading https://pypi.tuna.tsinghua.edu.cn/packages/f9/34/2107f342d4493b7107a600ee16005b2870b5a0a5a165bdf5c5e7168a16a6/torch-1.3.1-cp37-cp37m-manylinux1_x86_64.whl (734.6MB)
|████████████████████████████████| 734.6MB 71kB/s
Collecting torch-scatter==1.4.0 (from -r requirement.txt (line 4))
Downloading https://pypi.tuna.tsinghua.edu.cn/packages/b8/c3/8bad887ffa55c86f120ef5ae252dc0e357b3bd956d9fbf45242bacc46290/torch_scatter-1.4.0.tar.gz
ERROR: Command errored out with exit status 1:
command: /home/minglu1/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-8nqd722w/torch-scatter/setup.py'"'"'; file='"'"'/tmp/pip-install-8nqd722w/torch-scatter/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base pip-egg-info
cwd: /tmp/pip-install-8nqd722w/torch-scatter/
Complete output (5 lines):
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-install-8nqd722w/torch-scatter/setup.py", line 3, in
import torch
ModuleNotFoundError: No module named 'torch'
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
Is this an expected behavior?
You cannot put both torch
and the other packages into a single requirements.txt
file, because the installation of those packages depend on torch
:(
You cannot put both
torch
and the other packages into a singlerequirements.txt
file, because the installation of those packages depend ontorch
:(
Is it possible to add torch
to install_requires
in setup.py
just like https://github.com/rusty1s/pytorch_geometric/blob/master/setup.py#L7 for torch-scatter
, torch-cluster
and torch-sparse
so that we can have them in single requirements.txt
?
Per my understanding, the torch-scatter
, torch-cluster
and torch-sparse
are the kind of pytorch cpp/cuda extensions. Therefore, we have to install torch first then for these 3 packages.
@rusty1s Please correct me if my understanding is wrong.
That is absolutely correct. While the installation of torch-geometric
does not require the installation of these packages, you can not install both torch
and torch-scatter
via a single pip
command. This is a current limitation, sorry :(
The example requirement.txt is as below:
torch==1.3.1 torch-scatter==1.4.0 torch-sparse==0.4.3 torch-cluster==1.4.5 torch-geometric==1.3.2
Cannot successfully install the above packages via
pip install -r requirement.txt
Looking in indexes: https://pypi.tuna.tsinghua.edu.cn/simple Collecting torch==1.3.1 (from -r requirement.txt (line 1)) Downloading https://pypi.tuna.tsinghua.edu.cn/packages/f9/34/2107f342d4493b7107a600ee16005b2870b5a0a5a165bdf5c5e7168a16a6/torch-1.3.1-cp37-cp37m-manylinux1_x86_64.whl (734.6MB) |████████████████████████████████| 734.6MB 71kB/s Collecting torch-scatter==1.4.0 (from -r requirement.txt (line 4)) Downloading https://pypi.tuna.tsinghua.edu.cn/packages/b8/c3/8bad887ffa55c86f120ef5ae252dc0e357b3bd956d9fbf45242bacc46290/torch_scatter-1.4.0.tar.gz ERROR: Command errored out with exit status 1: command: /home/minglu1/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-8nqd722w/torch-scatter/setup.py'"'"'; file='"'"'/tmp/pip-install-8nqd722w/torch-scatter/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base pip-egg-info cwd: /tmp/pip-install-8nqd722w/torch-scatter/ Complete output (5 lines): Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-8nqd722w/torch-scatter/setup.py", line 3, in import torch ModuleNotFoundError: No module named 'torch' ---------------------------------------- ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
Is this an expected behavior?
Have you installed success?
Please install torch
first then install torch-scatter
,torch-cluster
and torch-sparse
.
Is there a solution for the requirements.txt problem yet?
requirements.txt
should work just fine when making use of our wheels, e.g.:
-f https://download.pytorch.org/whl/cpu/torch_stable.html
-f https://data.pyg.org/whl/torch-1.10.0+cu113.html
torch==1.10.0+cu113
torch-scatter
torch-sparse
torch-geometric
Hi, I tried the commands above, but it does not work for CPU version of geometric. My requirements.txt looks like this
-f https://download.pytorch.org/whl/cpu/torch_stable.html
-f https://data.pyg.org/whl/torch-1.7.1+cpu.html
torch==1.7.1+cpu
torch-scatter
torch-sparse
torch-geometric
torchvision==0.8.2
I got this error:
Collecting torch==1.7.1+cpu
Downloading https://download.pytorch.org/whl/cpu/torch-1.7.1%2Bcpu-cp38-cp38-linux_x86_64.whl (159.4 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 159.4/159.4 MB 19.0 MB/s eta 0:00:00
Collecting torch-scatter
Downloading torch_scatter-2.0.9.tar.gz (21 kB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'error'
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [6 lines of output]
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "/tmp/pip-install-4wy_n64m/torch-scatter_76aaac07d3de48339b4f8e1e528dd9a8/setup.py", line 8, in <module>
import torch
ModuleNotFoundError: No module named 'torch'
[end of output]
You need to specify the versioning when using older versions of PyTorch, see here:
-f https://download.pytorch.org/whl/cpu/torch_stable.html
-f https://data.pyg.org/whl/torch-1.7.1+cpu.html
torch==1.7.1+cpu
torch-scatter==2.0.7
torch-sparse==0.6.9
torch-geometric
torchvision==0.8.2
Works like a magic. Thanks!
You need to specify the versioning when using older versions of PyTorch, see here:
-f https://download.pytorch.org/whl/cpu/torch_stable.html -f https://data.pyg.org/whl/torch-1.7.1+cpu.html torch==1.7.1+cpu torch-scatter==2.0.7 torch-sparse==0.6.9 torch-geometric torchvision==0.8.2
@rusty1s I still get the same error as @sunshineatnoon in a Docker container (after running docker build -t
which runs these commands with the supposed newest version:
-f https://download.pytorch.org/whl/cpu/torch_stable.html
-f https://data.pyg.org/whl/torch-1.13.1+cpu.html
torch==1.13.1+cpu
torch-scatter
torch-sparse
torch-geometric
When it gets to installing torch_scatter
:
ModuleNotFoundError: No module named 'torch'
Can you confirm that the path https://data.pyg.org/whl/torch-1.13.1+cpu.html
is actually picked up by your installation?