Pushpa Itagi's repositories
Griffin
A flexible framework for nucleosome profiling of cell-free DNA
Language:PythonNOASSERTION000
lichee
Multi-sample cancer phylogeny reconstruction
Language:JavaNOASSERTION000
pairtree
Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.
Language:PythonMIT000
pyclone-vi
Fast method for inferring cancer clonal population structure from SNV data.
Language:PythonGPL-3.0000
SigProfilerAssignment
Assignment of known mutational signatures to individual samples and individual somatic mutations
Language:PythonBSD-2-Clause000
TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
Language:RGPL-3.0000