The goal of CopyKit is to help you analyze single cell DNA sequencing datasets for copy number. For that, CopyKit presents four modules:
- Pre-processing
- Quality Control
- Data Analysis
- Visualization
You can install the development version of CopyKit from github with:
devtools::install_github("navinlabcode/copykit")CopyKit requires R version 4.0 or later.
The complete documentation can be found at: https://navinlabcode.github.io/CopyKit-UserGuide/
CopyKit has not yet been peer-reviewed so please use it with caution. We do our best to provide a bug free software, however CopyKit is in its infancy and some growing pains are expected. Please let us know of any issues and we will be happy to take a look at it. We greatly appreciate suggestions. Please make sure to, if possible, include a reproducible example and the output of your sessionInfo() when opening an issue.
Thanks to Aislyn Schalck for the awesome CopyKit logo design.