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ptitle

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climenv

climenv: download, extract and visualise climatic and elevation data

Language:RStargazers:4Issues:0Issues:0

chelsaDL

download CHELSA climate data

Language:RStargazers:9Issues:0Issues:0

ecotrends

Spatio-temporal trends in habitat suitability from ecological niche models

Language:RLicense:NOASSERTIONStargazers:6Issues:0Issues:0

centerline

An R package to retrieve the centerline of polygons

Language:RLicense:NOASSERTIONStargazers:30Issues:0Issues:0

dggridR

Discrete Global Grids for R: Spatial Analysis Done Right

Language:C++License:AGPL-3.0Stargazers:160Issues:0Issues:0

utremi

Language:ShellLicense:GPL-3.0Stargazers:4Issues:0Issues:0

bagels

open source bagel recipe; let's raise the quality of bagels worldwide :bagel: :rocket:

License:GPL-3.0Stargazers:26Issues:0Issues:0

RISDM

R package to fit integrated SDM models (with PO, PA and abundance data)

Language:RLicense:LGPL-2.1Stargazers:12Issues:0Issues:0

phyloshapeR

Package to plot phylogenies with custom shapes

Language:RStargazers:22Issues:0Issues:0

prepr

An R package to repair broken GIS polygons using the prepair (https://github.com/tudelft3d/prepair) Cpp library - mirror to the Gitlab repository..

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PKS-Test

The PKS Test software was designed to directly verify whether a phylogeny is clock-like following a Poisson law.

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phylomad

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ClockstaRX

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biostats

Statistics app for introductory biology students

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chronos

ultrametricity or bust

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CASTLES

Coalescent-Aware Species Tree Length Estimation in Substitution-units

Language:MathematicaLicense:MITStargazers:4Issues:0Issues:0

treetime

Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

Language:Jupyter NotebookLicense:MITStargazers:223Issues:0Issues:0

chronumental

Estimating time trees from very large phylogenies

Language:PythonLicense:MITStargazers:24Issues:0Issues:0

ml-morph

Machine-learning-based morphometrics

Language:PythonLicense:GPL-3.0Stargazers:31Issues:0Issues:0

treepl

Repo to run treepl using bootstrap alignments

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AMAS

Calculate summary statistics and manipulate multiple sequence alignments

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prequal

PREQUAL: a pre-alignment quality filter for comparative sequence analyses

Language:C++License:GPL-3.0Stargazers:30Issues:0Issues:0

scidataflow

Command line scientific data management tool

Language:RustLicense:MITStargazers:206Issues:0Issues:0

LMdist

LMdist is an unsupervised algorithm for correcting oversaturated pairwise distance and dissimilarity measures. Compatible with any pairwise beta diversity measure, LMdist will uncover underlying environmental gradients and resolve arches/horseshoes in ordination.

Language:RLicense:AGPL-3.0Stargazers:5Issues:0Issues:0

coati

Codon-Aware Multiple Sequence Alignments

Language:C++License:MITStargazers:18Issues:0Issues:0

SequenceBouncer

A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).

Language:PythonLicense:GPL-3.0Stargazers:9Issues:0Issues:0

waywiser

Ergonomic tooling to assess models of spatial data

Language:RLicense:NOASSERTIONStargazers:38Issues:0Issues:0

DPAMSA

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zoomerjoin

Superlatively-fast fuzzy-joins in R

Language:RLicense:GPL-3.0Stargazers:100Issues:0Issues:0

how_we_work

Lab best practices and policies to conduct open, reproducible, and inspiring science that is efficient and fun

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