Pat Schloss's repositories
mothur
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
pschloss.github.io
Pat Schloss's website
Sze_PCRSeqEffects_mSphere_2019
The impact of DNA polymerase and number of rounds of amplification in PCR on 16S rRNA gene sequence data
nkidsfarm_website
farm website
2019-12-02-Close_CodeReview_RSubsamplingShared
Review of Will Close's code for subsampling shared files to a desired number of reads.
archive
R bindings to libarchive, supporting a large variety of archive formats
bioconda-recipes
Conda recipes for the bioconda channel.
intro-curriculum-r
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
Kozich_ReAnalysis_AEM_2017
My attempt to reproduce the Kozich et al. study
pandaseq
PAired-eND Assembler for DNA sequences
paper-airplane
Repository to demonstrate how to fold a paper airplane
paper_airplane
An exercise to test the reposucibility of folding paper airplanes
regexcite
Convenient Functions for Splitting Strings
rr_practice
A repository to test out my efforts to make my research more reproducible
rweekly.org
R Weekly
silly_repository
The silly_repository from the Riffomonas reproducible research tutorial series
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks