prody / ProDy

A Python Package for Protein Dynamics Analysis

Home Page:http://prody.csb.pitt.edu

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Incompatibility with latest SciPy version 1.14.0

melschneider opened this issue · comments

Hi, I just wanted to point this out in case you haven't noticed, yet.

The ProDy NMA modules are incompatible with the latest SciPy version 1.14.0, as according to the release notes "The turbo and eigvals arguments from scipy.linalg.{eigh,eigvalsh} have been removed."
SciPy version 1.13.1 still works with ProDy, but when trying to run it with SciPy version 1.14.0 one gets the error:
TypeError: eigh() got an unexpected keyword argument 'turbo'.

Thanks for the reminder. I did see some deprecation warnings about that at some point.

@atbogetti, how about we update the requirements for now?

@jamesmkrieger That sounds good to me. Thanks.

The fix pull request should be ready now. The first commit wasn't enough