Pro's repositories
atac-seq-pipeline
ENCODE ATAC-seq pipeline
bioconda-recipes
Conda recipes for the bioconda channel.
Bite-size-R-v2
CRUK-CI Bite-size R course
Bitesize_SingleCell
April - May 2022
Bulk_RNASeq_Course_March23
Course repo for March 2023
Bulk_RNAseq_Course_Nov22
Nov - Dec 22
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
chromhmm-pipeline
WDL pipeline for chromhmm
dnase-seq-pipeline
ENCODE DNase-seq pipeline
experimental-design
A Course on designing high-throughput experiments
IntroductionToStats
Refresher training course on the foundations of statistical analysis. http://tinyurl.com/cruk-stats
linear-models-r
Going beyond the t-test in R and introducing linear regression and ANOVA (http://tinyurl.com/linear-models-r)
long-read-rna-pipeline
ENCODE long read RNA-seq pipeline
Managing-your-research-data
Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)
metabolomics2018
Workshop for the xcms(3) workshop at the metabolomics 2018 conference in Seattle
PHD-Dataskills
CRUK PhD Dataskill session (https://tinyurl.com/dataskillz)
Quantitative-ChIPseq-Workshop
EuroBioc 2020 Workshop: ChIP and ATAC analysis with DiffBind
r-intro-1
R training course during the coronavirus lockdown
regulome-encoded
Temp repo for regulome development
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
sentieon-google-genomics
Run Sentieon pipelines on Google Cloud Platform
wgbs-pipeline
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline