Rusty Nicovich's repositories
BenlideChambers
Files and assembly instructions for 3D printed microscopy imaging chambers. Work done by Ben Goodnow for Single Molecule Science at UNSW.
SerialMultiplexer
Liquid handling robot for in situ serial multiplexing
3D-Printed-Optics-Lab-Parts
Various parts made for fluorescence microscopy + optics work
cheesoSPIM
A cheap mesoscopic light sheet and optical projection tomography microscope
smlmsurfacereconstruction
3D surface reconstruction from single molecule localization microscopy data
makeSMLMFrames
Simulation code for SMLM data starting with experimental detection event table
NPROT.2016.166
Code associated with publication "Turning single-molecule localization microscopy into a quantitative bioanalytical tool" Philip R Nicovich, Dylan M Owen & Katharina Gaus Nature Protocols volume 12, pages 453–460 (2017)
ccf_registration_2020
CCF Registration Competition 2020
Continuous_FRC_SMLM
Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)
HouseProjects
Around-the-house woodworking and design projects
Hx711_circuitpython
Forking HX711 code to work w/ clearing 'bot
matrixTicker
Firmware for 8x8 animated LED matrix
NBT-RA37689
MATLAB code associated with Ma, et al. "A FRET sensor enables quantitative measurements of membrane charges in live cells."
NMETH-C19079A
Custom analysis scripts used in Nature Methods publication NMETH-C19079A
RaspberryPi
Python for Raspberry Pi
storm-control
Zhuang lab microscope control software