PPSG's repositories
aGWA
Scripts for ancestry Genome Wide Association
AraGWAS
GWAS catalogue for Arabidopsis thaliana
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Awesome-CV
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
beautiful-jekyll
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
bioinformatics-one-liners
my collection of bioinformatics one liners that is useful in my day-to-day work
ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
DNA-methylation-analysis
my notes on DNA methylation analysis (arrays and sequencing data)
DNA-seq-analysis
my notes on structural variants analysis by lumpy
evachan.org-Rscripts
Handy genetics-related R scripts
Genomics-and-bioinformatics
Exercise sheets
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics
jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
microRNA-sequencing
Creation of a repository for microRNA-sequencing pipeline
MIT6.00.1x-Introduction-to-Computer-Science-and-Programming-Using-Python
my notes for the homework
my-git
Individual collecting material of learning git（有关 git 的学习资料）
permuting-feature-enrichment-test
A tool to test the enrichment of genomic features by permutations
pop-gen-pipeline
This is a pipeline to follow when designing and analyzing a population genetic whole-genome resequencing experiment.
popgen-stats
Scripts to calculate population genetics statistics
PopLDdecay
PopLDdecay: A new simple and efficient software for Linkage Disequilibrium Decay analysis based Variant Call Format
RNA-sequencing
Repository containing all custom pipeline, perl scripts and R scripts used for RNA-sequencing data analyses
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
SelectionHapStats
SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to visualize the signatures of selective sites.
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities