porchard / normalize_bedgraph

Normalize bedgraph files

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Normalize bedgraph

Given a bedgraph file, normalize it to a given signal/base or to a given number of reads.

Usage:

Pass the -h flag for a list of arguments. Two common use cases would be:

python normalize_bedgraph.py --to-mean-signal 1.0 unnormalized.bdg > normalized.bdg
python normalize_bedgraph.py --to-number-reads 10000000 unnormalized.bdg > normalized.bdg

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Normalize bedgraph files


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