- Molgenis default
How to
a. Websites
b. Publications - 1000IBD
a. Websites
b. Publications - BBRMI-ERIC
a. Websites
b. Publications - VKGL How to a. Websites
MOLGENIS: Flexible software for scientific data
Css minified in molgenis repository using: https://cssminifier.com/
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button. - Swertz et al.
https://www.ncbi.nlm.nih.gov/pubmed/21210979
Beyond standardization: dynamic software infrastructures for systems biology. - Swertz & Jansen
https://www.ncbi.nlm.nih.gov/pubmed/17297480
The 1000IDB project describes patients and samples with inflammatory bowel disease.
A public MOLGENIS data server can be found here.
It contains an overview of data and research results.
TODO: add papers + url's
BBMRI-ERIC aims to establish, operate and develop a pan-European distributed research infrastructure of biobanks and biomolecular resources in order to facilitate the access to resources as well as facilities and to support high quality biomolecular and medical research.
A public MOLGENIS data server can be found here.
It contains the BBMRI-ERIC Directory containing biobanks and sample collection metadata form organizations all over Europe.
You can read more about the BBMRI-ERIC groups and projects at http://www.bbmri-eric.eu/
Biopreservation and Biobanking - Holub Petr, Swertz Morris, Reihs Robert, van Enckevort David, Müller Heimo, and Litton Jan-Eric
http://online.liebertpub.com/doi/10.1089/bio.2016.0088
Association of Clinical Lab Diagnostics (Vereniging Klinische Lab Diagnostiek)
This script generates the consensus table for the VKGL project
To run: incude a config.txt in the directory of this project. The file should look like: config_example.txt.
Make sure you have loaded tables with the metadata of the VKGL project on your molgenis server.
Now run VKGL_consensus_table_generator.py
Work in progress