Stephen Wyka's starred repositories

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Language:C++License:GPL-3.0Stargazers:772Issues:39Issues:828

OrthoFinder

Phylogenetic orthology inference for comparative genomics

Language:PythonLicense:GPL-3.0Stargazers:685Issues:27Issues:894

BuscoOrthoPhylo

Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs

Language:PythonLicense:MITStargazers:19Issues:2Issues:1

maffilter

The MafFilter genome alignment processor

Language:C++License:GPL-3.0Stargazers:17Issues:4Issues:30

FunFinder_Pangenome

Data analysis of Funannotate and Orthofinder outputs to Pangenome results

Language:PythonLicense:MITStargazers:16Issues:1Issues:0

TransposableELMT

Wrapper script to identify TEs and mask genome

Language:PythonLicense:MITStargazers:4Issues:1Issues:1