pjotrp

guix-notes

This repo has moved to https://gitlab.com/pjotrp/guix-notes Notes on Guix

bioinformatics

Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics

deploy

Pjotr's deployment tools

linux-at-university-of-tennessee

Using Linux at the University of Tennessee

yaj

Pilot project for Biohackathon 2017

ruby-odgi

Ruby bindings for ODGI

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files

gbam

guix-genomics

guix packages for bioinformatics software

Panorama-talk

ptodo

Command line todo organizer (interacts with remind and org-mode)

racket-bibtex

Bibtex mangler in Racket (uses Pandoc json)

bh23

bhxiv-gen-pdf

Generate a PDF for BioHackrXiv.org

bioruby-bioinformatics-impact

Calculate impact for researchers in bioinformatics

cl-cxx

Common Lisp and CXX interoperation

genenetwork2

GeneNetwork (2nd generation)

genenetwork3

GeneNetwork3 REST API for data science and machine learning

gfainject

guile-gsl

Bindings for GNU Scientific Library in Guile.

guile-lmdb

LMDB (Lightning Memory-Mapped Database) bindings for Guile.

linenoise

A small self-contained alternative to readline and libedit

odgi

optimized dynamic genome graph implementation

preview.biohackrxiv.org

webapp source for preview.biohackrxiv.org

rs-wfa

Rust bindings to the wavefront algorithm C implementation

schema_salad

Semantic Annotations for Linked Avro Data

smoothxg

linearize and simplify variation graphs using blocked partial order alignment

tabixpp

C++ wrapper to tabix indexer

WFA2-lib

WFA2-lib: Wavefront alignment algorithm library v2

wfmash

base-accurate DNA sequence alignments using WFA and mashmap2