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pinellolab / haystack_bio

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

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replicates with haystack_bio

mistrm82 opened this issue · comments

commented

How does haystack_bio handle replicates? For example, if each celltype in the example had 3 replicates therefore 3 input BAMs can we still run this?

commented

As of yet, it does not handle replicates. You would need to merge them. Of course you can also treat the 3 replicates as different cell types and merge the specific regions that are consistent across all three.