haystack_download_genome error
GleeenSIBS opened this issue · comments
When I use haystack_download_genome command to download the reference genome, it displayed the fowlling error:
Traceback (most recent call last):
File "/picb/epigenome/usr/zhangge/Softwares/haystack_bio_master/haystack/download_genome.py", line 24, in
main()
File "/picb/epigenome/usr/zhangge/Softwares/haystack_bio_master/haystack/download_genome.py", line 21, in main
initialize_genome(args.name)
File "/picb/epigenome/usr/zhangge/Softwares/haystack_bio_master/haystack/haystack_common.py", line 213, in initialize_genome
from bioutilities import Genome_2bit
File "/picb/epigenome/usr/zhangge/Softwares/haystack_bio_master/haystack/bioutilities.py", line 20, in
from bx.intervals.intersection import Intersecter, Interval
File "/home/zhangge/miniconda3/envs/python27/lib/python2.7/site-packages/bx/intervals/init.py", line 7, in
from bx.intervals.intersection import * # noqa: F40
ImportError: /home/zhangge/miniconda3/envs/python27/lib/python2.7/site-packages/bx/intervals/intersection.so: undefined symbol: PyUnicodeUCS2_FromStringAndSize
How can I solve this? Thanks!
Hi,
New Python package version updates probably broke the code. Can you please use the Docker installation method instead? https://github.com/pinellolab/haystack_bio#other-installation-options
Thanks
Rick,