Pierre Barrat's repositories
TreeKnit.jl
TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
TreeTools.jl
Tools for handling rooted phylogenetic or genealogic trees with Julia.
ArDCA.jl
Autoregressive networks for protein
BackwardCoalescent.jl
Simulate genealogies with a backward coalescent approach. Based on TreeTools.jl
DataFrames.jl
In-memory tabular data in Julia
FrequencyTrajectories.jl
Frequency trajectories for population dynamics
MTKTools
This package contains methods for testing the accuracy of the MultiTreeKnit module of TreeKnit.jl
pangraph
A bioinformatic toolkit to align genome assemblies into pangenome graphs
PartialSweepSIR.jl
Multi-strains SIR model that generates partial selective sweeps
PierreBarrat.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Pluto.jl
🎈 Simple reactive notebooks for Julia
WrightFisher.jl
Simulation of genomes in constant a size population with selection and mutations