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picrust / picrust2

Code, unit tests, and tutorials for running PICRUSt2

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picrust2_outputs

WillErickson1 opened this issue · comments

commented

Hello, I hope you could help me
I runned this command line : picrust2_pipeline.py -s study_seqs.fna -i study_seqs.biom -o picrust2_out_pipeline -p 1
image

my question is where I can find metacyc abundance output files ? does it in pathways_out ?

commented

Hi there, yes, the metacyc abundance output file is pathways_out/path_abun_unstrat.tsv.gz. You can see the answers to some questions about the pathway abundances here.

commented

I am just closing this issue as there hasn't been any follow-up for a while. Please let me know if this needs to be reopened.