philarevalo

PopCOGenT

Microbial Populations as Clusters Of Gene Transfer

RiboTree

Pipeline to make a phylogeny from ribosomal proteins pulled from microbial genomes

dnds_COGenT

Pipeline for calculating dn/ds.

rmarkdown

Dynamic Documents for R

BBMap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

default_environment

Code and documentation of my preferred default environment

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

NeverSink-Filter

This is a lootfilter for the game "Path of Exile". It hides low value items, uses a markup-scheme and sounds to highlight expensive gear and is based on economy data mining.

Perth2009-DMS-Manuscript

manuscript for deep mutational scanning of Perth/2009 H3N2 HA

philarevalo.github.io

Phil Arevalo's personal website

sem-bio-wes-cis-263