Phenoscape's repositories
rphenoscape
R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.
scate-shortcourse
Package for the "Phylogenetic comparative analysis of integrated anatomical traits" short course
sparql-utils
Scala SPARQL utilities
KB-DataFest-2017
Promoting Phenoscape KB Data Access and Interoperability Codefest, 2017
pheno-repo
Repository of OWL-based phenotypic descriptions
phenoscape-owl-tools
OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.
TraitFest-2023
Main repository for information advertising and documenting the 2023 SCATE TraitFest
phenoscape-data
NeXML data files annotated by Phenoscape curators.
blazegraph-docker
Docker image for running a Blazegraph server
EnviroPackets
exploration of using phenopackets to describe environments
phenoscape-kb-services
Web services application for the Phenoscape RDF knowledgebase.
phenoscape-kb-ui
Phenoscape KB web user interface.
phenoscape.github.com
Phenoscape website
pipeline-tools
Command-line environment needed to build Phenoscape Knowledgebase
teleost-taxonomy-ontology
An ontology covering the taxonomy of teleosts (bony fish). Now superseded by Vertebrate Taxonomy Ontology.
homology-annotations-demo
Demonstration files for OWL homology models
kb-data-extracts
Queries (primarily in SPARQL) for data extraction from the Phenoscape KB
phenoscape-kb-ingest
Translations of data sources into OWL axioms for import into the Phenoscape Knowlegebase.
phenoscape-kb-web-ui
Redesigned Phenoscape KB web user interface — in development
python-owlery-client
Python client library for the Owlery OpenAPI