PejLab's repositories
aFCs
Contains GTEX aFC estimates
ANEVA-DOT_reference_datasets
ANEVA-DOT reference datasets
bin_scripts
Useful scripts to have in your "~/bin/" directory.
haptwas
Haplotype Aware TWAS project
jupyter-slack-notify
A magic command for notifications via slack
pejlab.github.io
Website for the PejLab
Pejtools
These are a bunch of codes that makes daily data science/bioinformatics tasks easier in Matlab. No rocket science
SynNet
Toolbox for design and optimization of miRNA-based synthetic classifier pathways
TiMEx
Bioconductor package for finding mutually exclusive groups of alterations in large cancer datasets
vgdat
Utilities and starter code to match Ensembl IDs with population variance estimates from GTEx v7.
allelecounter
Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.
blnm
Tools for sampling and parameter inference of the binomial-logit-normal distribution.
BMix
BMix is a novel probabilistic method based on a constrained three-component mixture, which identifies high confidence T-to-C substitutions in PAR-CLIP data, and, based on these, reports putative RNA-protein cross-link sites.
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
phaser
phasing and Allele Specific Expression from RNA-seq
recNW
Fast recursive pairwise aligner for targeted sequencing