Patrick Lombard's repositories
pyatactools
Pipeline for ATAC-seq analysis
cheatsheets
Various cheatsheets for python/R packages I use
chipseq_misc
Miscellaneous scripts for ChIP-seq analysis
example_docker_django_app
Example docker with django, nginx, mysql, redis, celery
gemini
a lightweight db framework for exploring genetic variation.
igv-reports
Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
ngs_metrics_app
Django app which plots metrics of NGS samples
pychiptools
Pipeline for ChIP-seq analysis
PyGProfile
PyGProfile is a Python module to profile gene lists using Gene Ontology, Pathways and phenotypic annotation
pyngspipe
Automated pipeline for processing RNA-seq and ChIP-seq samples from GEO
pyngsplot
Plotting transcription and peak regions for ChiP-seq and RNA-seq data
pynoncode
A pipeline for the analysis of Non-coding RNA profiling by high throughput sequencing
pyribotools
Python package for analysing Riboseq data
pyrnatools
Pipeline for RNA-seq analysis
python_snippets
Collection of useful python scripts
rnaseq_misc
Miscellaneous scripts for RNA-seq analysis