Data Files for HIV-1 Manuscript titled "HIV-1 Drug Resistance and Genetic Diversity in a Cohort of people living with HIV-1 in Nigeria"
This repository contains template consensus sequences (TCSs), individual representative sequences and results of mapping to the HIV-1 reference genome (HXB2).
A custom bash script used for extracting representative sequences from TCSs is also provided:
How to run the bash script:
In your terminal:
Go to the directory where you save this script. (using cd command)
cd [path_to_script]
Run the script to randomly pick a certain number of sequences. change [path_to_your_fasta_sequence] and [number_of_sequence_to_pick]
random_pick_sequence [path_to_your_fasta_sequence] [number_of_sequence_to_pick]