William Patton's repositories
mwatershed
A rusty mutex watershed
mwatershed_agglom
scripts for blockwise global agglomeration using mutex watershed
cnnectome.conversion
scripts and helper functions for converting trained tensorflow cnnectome models to pytorch
zebrafish_experiments
scripts and configs for running zebrafish experiments
augment
Simple elastic augmentation for ND arrays
contextnet
library and scripts for training models with arbitrarily large context
core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
daisy
Block-wise task scheduling for large nD volumes.
everything-will-be-fine
Semantic Segmentation DL@MBL-2023 team
fibsem-tools
Tools for handling FIB-SEM data and annotations
funlib.geometry
A package for Coordinates, Rois and common operations in Coordinate spaces
funlib.show.neuroglancer
Scripts and helpers for the neuroglancer WebGL viewer.
lsd
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model-specs
Some example model specs for use with napari plugins
napari-pssr
napari plugin for pssr
py-swc-parser
An swc parser for python.
secret-santa
Some scripts to create secret santa assignments
spec-bioimage-io
Specification for the bioimage.io model description file.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks