Partho Sen (PhD)'s repositories
Personalized_Liver_Models
Scripts and wrappers for GSMM
biobakery
bioBakery tools for meta'omic profiling
biodatascience
This is the web resource for NTU's Bio-Data Science and Education Laboratory
Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
Context_Specific_Models_from_GeMS
A systematic evaluation of methods for tailoring genome-scale metabolic models
Diab_GSMM_T1D
Scripts for data analysis and GSMM – Diabimmune T1D study
export2graphlan
Conversion software tool for producing both annotation and tree files for GraPhlAn
Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
GWA_tutorial
A comprehensive tutorial about GWAS and PRS
humann
HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
IRFinder
Scheduled for testing
iSLS9
iSLS9 data analysis workshop
matplotlib
matplotlib: plotting with Python
ml-webinar
Webinar: Machine Learning on Puhti
panphlan
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
parthosen.github.io
My personal website
preprocessing
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
symatrial
Analysis code for the symatrial project
Tutorials
Code for some of my tutorials