Partho Sen (PhD)'s repositories
Personalized_Liver_Models
Scripts and wrappers for GSMM
biobakery
bioBakery tools for meta'omic profiling
biodatascience
This is the web resource for NTU's Bio-Data Science and Education Laboratory
Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
Context_Specific_Models_from_GeMS
A systematic evaluation of methods for tailoring genome-scale metabolic models
Diab_GSMM_T1D
Scripts for data analysis and GSMM – Diabimmune T1D study
export2graphlan
Conversion software tool for producing both annotation and tree files for GraPhlAn
Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
GWA_tutorial
A comprehensive tutorial about GWAS and PRS
humann
HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
IRFinder
Scheduled for testing
matplotlib
matplotlib: plotting with Python
ml-webinar
Webinar: Machine Learning on Puhti
panphlan
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
parthosen.github.io
My personal website
preprocessing
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
symatrial
Analysis code for the symatrial project
Tutorials
Code for some of my tutorials