Would you please support mm10?

Question

Would you please support mm10?

shengqh opened this issue 3 years ago · comments

Thank you so much for this great tool. I recently replace my visualization tools with bamsnap on our pipeline. However, today I just figured out that bamsnap didn't support mm10. Is it possible to support it?

SeongGyuKwon · Answer 1 · Tue Apr 13 2021 21:02:33 GMT+0800 (China Standard Time)

Hello,

I am using bamsnap fine with bam files aligned with mm10. (I am not a developer of this tool.)

It would be helpful if you post the error code.

Quanhu Sheng · Answer 2 · Tue Apr 13 2021 22:19:19 GMT+0800 (China Standard Time)

Hello,

I am using bamsnap fine with bam files aligned with mm10. (I am not a developer of this tool.)

It would be helpful if you post the error code.

Without official support, we cannot draw gene track in figure.

Quanhu Sheng · Answer 3 · Fri Apr 16 2021 09:33:09 GMT+0800 (China Standard Time)

Hello,
I am using bamsnap fine with bam files aligned with mm10. (I am not a developer of this tool.)
It would be helpful if you post the error code.

Without official support, we cannot draw gene track in figure.

Or, is it possible to share the code that you used to generate reference genome files?

Quanhu Sheng · Answer 4 · Sat Apr 17 2021 23:00:29 GMT+0800 (China Standard Time)

I forked and added mm10 support at https://github.com/shengqh/bamsnap. I used the script under folder data to convert ensembl gtf to bed format that bamsnap required.