pacocp

Francisco Carrillo Pérez's starred repositories

SPATA2

A Toolbox for Spatial Transcriptomics Analysis

Language:R8700

wren

The simplest task management system with the most advanced features

Language:PythonMIT30200

spatialvi

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Language:NextflowMIT4800

conformal-predictions-from-scratch

Various Conformal Prediction methods implemented from scratch in pure NumPy for an educational purpose.

Language:Jupyter Notebook18100

Academic-project-page-template

A project page template for academic papers. Demo at https://eliahuhorwitz.github.io/Academic-project-page-template/

Language:JavaScript176700

marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

Language:PythonApache-2.0608800

GWA_tutorial

A comprehensive tutorial about GWAS and PRS

80700

ml-aim

This repository provides the code and model checkpoints of the research paper: Scalable Pre-training of Large Autoregressive Image Models

Language:PythonNOASSERTION68000

cv

Print-friendly, minimalist CV page

Language:TypeScriptMIT881900

cycle-diffusion

[ICCV 2023] A latent space for stochastic diffusion models

Language:PythonNOASSERTION55300

mamba-minimal

Simple, minimal implementation of the Mamba SSM in one file of PyTorch.

Language:PythonApache-2.0252800

diffinfinite

DiffInfinite Official Code

Language:Jupyter NotebookMIT2300

macOSpilot-ai-assistant

Voice + Vision powered AI assistant that answers questions about any application, in context and in audio.

Language:JavaScript112100

udlbook

Understanding Deep Learning - Simon J.D. Prince

Language:Jupyter NotebookNOASSERTION602000

meditron

Meditron is a suite of open-source medical Large Language Models (LLMs).

Language:PythonApache-2.0182700

big_vision

Official codebase used to develop Vision Transformer, SigLIP, MLP-Mixer, LiT and more.

Language:Jupyter NotebookApache-2.0218000

ImageBind

ImageBind One Embedding Space to Bind Them All

Language:PythonNOASSERTION820200

OpenRLHF

An Easy-to-use, Scalable and High-performance RLHF Framework (70B+ PPO Full Tuning & Iterative DPO & LoRA & Mixtral)

Language:PythonApache-2.0198400

medical-ai-experiments

A repository to house some personal attempts to beat some state-of-the-art for medical datasets

MIT9600

consistencydecoder

Consistency Distilled Diff VAE

Language:PythonMIT212300

PiML-Toolbox

PiML (Python Interpretable Machine Learning) toolbox for model development & diagnostics

Language:Jupyter NotebookApache-2.091900

system-design-101

Explain complex systems using visuals and simple terms. Help you prepare for system design interviews.

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Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.

Language:Python25600