outboundbird / bmk_book

An incomplete learning notes on statistics for biological markers analysis in pharmaceutical context

A notebook for biomarker analysis in pharmacutical setting

Author: Siying Huang, PhD Data scientist freelancer, [Resume] (https://awesometomato.shinyapps.io/web_cv/)

Table of content

Introduction

Basic biology

Cell type analysis

Gene expression measured by bulk RNA sequencing

Gene expression measured by nanostring

Pharmacogenetic analysis

Multiple comparisons

Power and sample size calculaiton

Visualization