Oldrich's repositories
DLpipeline
Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning
African_A.thaliana
Durvasula and Fulgione et al 2017. "African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana" PNAS 2017, 114(20):5213-5218. URL: http://www.pnas.org/content/114/20/5213.long
bnn
bee detection conv net for a rasp pi on side of a hive
hisat2
Graph-based alignment (Hierarchical Graph FM index)
LandscapeGenomics
Tutorials for bioinformatics and data analysis related to landscape genomics
lrscaf
TGS scaffolding
msmc-tools
Tools and Utilities for msmc and msmc2
perceptions
Perceptions of Probability and Numbers
PheWAS
The PheWAS R package
py-faster-rcnn
Faster R-CNN (Python implementation) -- see https://github.com/ShaoqingRen/faster_rcnn for the official MATLAB version
rMVP
A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
tensorqtl
Ultrafast QTL mapper based on tensorflow
VoTT
Visual Object Tagging Tool: An electron app for building end to end Object Detection Models from Images and Videos.