myth's repositories
GSSplayground
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
pymsaploter
plot Multiple Sequence Alignment(MSA) of Clustal by python package
tinypandas
easy-to-use data structures and data analysis tools ( still be in draft, inspired by Python Pandas )
doi2scihub
a simple chrome extension for navigate to scihub by doi
PAMpredict
A python package to predict CRISPR-Cas PAMs
AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
awesome-CRISPR
List of software/websites/databases/other stuff for genome engineering
crystal
The Crystal Programming Language
LRS_SV_sets
VCF files of SVs using long-read sequencing (LRS).
OpenCRISPR
AI-generated gene editing systems
panel
A high-level app and dashboarding solution for Python
pdbe-molstar
Molstar PDBe implementation
python-mastery
Advanced Python Mastery (course by @dabeaz)
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
wasmer-crystal
WebAssembly runtime for Crystal