onurcanbektas

scnmtseq

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

incubator-mxnet

Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more

bashgpt

Ask ChatGPT to write bash scripts directly from your terminal

BPCells

Scaling Single Cell Analysis to Milllions of Cells

burn

Burn is a new comprehensive dynamic Deep Learning Framework built using Rust with extreme flexibility, compute efficiency and portability as its primary goals.

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.

EAIWS23

Emergent Algorithmic Intelligence Winter School 2023

errors

Uncertainty Propagation for R Vectors

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

generative_models_examples

playground for generative models

gt-nlp-class

Course materials for Georgia Tech CS 4650 and 7650, "Natural Language"

JuliaDataScience

Book on Julia for Data Science

masterthesis

Info package for students who are about to start working on their master thesis.

mbp-2016-linux

State of Linux on the MacBook Pro 2016 & 2017

neural-engine

Everything we actually know about the Apple Neural Engine (ANE)

OAD

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

org-roam-bibtex

Org Roam integration with bibliography management software

pallium_evo

Analysis of axolotl pallium gene expression data in the context of evolution and neurogenesis

PC-Clocks

Code for the calculation and implementation of the PC Based epigenetic clocks

playground

Play with neural networks!

quantification_nextflow

A Nextflow pipeline for scRNA-seq and Visium data quantification using kallisto. Mostly used for axolotl data.

reanimate

Haskell library for building declarative animations based on SVG graphics

scRNA-seq_notes

A list of scRNA-seq analysis tools

scRNA.seq.course

Analysis of single cell RNA-seq data course

starter-hugo-academic

🎓 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.

Teaching

thesisdown

An updated R Markdown thesis template using the bookdown package

TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

Zettel-hs

Simple plain text ZettelKasten system for terminal users