olufawom

unilm

Large-scale Self-supervised Pre-training Across Tasks, Languages, and Modalities

computer-science

🎓 Path to a free self-taught education in Computer Science!

marker

Convert PDF to markdown quickly with high accuracy

NetDynFlow

A package to study complex networks based on the temporal evolution of their Dynamic Communicability and Flow.

Raidionics

Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes

CLRS

:notebook:Solutions to Introduction to Algorithms

gbm-data-longitudinal

This repository contains code used to prepare the LUMIERE Glioblastoma dataset.

ML_from_Scratch

Implementation of basic ML algorithms from scratch in python...

awesome-ml-demos

Curated list of interactive ML demos

kepler-mapper

Kepler Mapper: A flexible Python implementation of the Mapper algorithm.

MutScape

Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization for studying cancer genomics.

input-leap

Open-source KVM software

cnvkit

Copy number variant detection from targeted DNA sequencing

gatk

Official code repository for GATK versions 4 and up

numpyro

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

biopieces

Biopieces is a bioinformatic framework of tools easily used and easily created.

pyts

A Python package for time series classification

localGPT

Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.

PyDMD

Python Dynamic Mode Decomposition

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

BrainSurfaceAnimation

nidmd

Python Module for the computation and visualisation of fMRI time-series Dynamic Mode Decomposition.

dsatools

Digital signal analysis library for python. The library includes such methods of the signal analysis, signal processing and signal parameter estimation as ARMA-based techniques; subspace-based techniques; matrix-pencil-based methods; singular-spectrum analysis (SSA); dynamic-mode decomposition (DMD); empirical mode decomposition; variational mode decomposition (EMD); empirical wavelet transform (EWT); Hilbert vibration decomposition (HVD) and many others.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

VLTimeSeriesCausality

A framework to infer causality on a pair of time series of real numbers based on Variable-lag Granger causality and transfer entropy.

ANTs

Advanced Normalization Tools (ANTs)

rest2vec

rest2vec: Vectorizing the resting-state functional connectome using graph embedding

hctsa

Highly comparative time-series analysis

awesome-time-series

Resources for working with time series and sequence data

plotSurfaceROIBoundary

Plot the boundaries of ROIs on a surface