Olga Tsiouri's repositories
bioinfo_gui_scripts
python scripts that can be easily trasformed to gui programs for wet lab scientists to use
protein_physicochemical_properties_calculator
ProtParam based program that outputs the id, pI, charge and molecular weight of each protein
biomisc_julia
collection of miscellaneous command line bioinformatic scripts written in julia for speed
codon_optimize_cds_with_many_taxids_singlefasta
Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids
CpG_island_identificator
CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method
CpG_island_identificator_julia
CpG island identification using the Gardiner-Garden and Frommer (1987) method that exports the results in a txt file containing the id, start, end, strand, gc content and obs/exp ratio
iGEM-distribution
Repository for collective design of an iGEM DNA distribution
pdb_viewer_binder
binder to visualize structures from pdb files
pdbs_secondary_structure_statistics
Linux GUI Program to calculate the percentage of each secondary structure for each input pdb file in a user specified directory
tm_calculator_gui
Calculates the melting temperature(in Celsius) of a user imported forward and reverse primer based on primer blast default parameters & pcr additives
trigonometric_and_logarithmic_calculator
calculates basic trigonometric, logarithmic and exponential with Euler's number as base values, using user input
codon_optimize_cds_with_many_taxids_multifasta
Linux GUI app to codon optimize a multi-fasta file with coding sequences with multiple taxonomy ids
fsk-auto-timeline
Automated timeline create of standardized fungal transformation, using Python
Gene-isoform-collector
Windows and linux GUI and command line app that searches and exports the isoforms of each input gene loci
retrieve_n50_l50_n90_l90
command line and GUI scripts that retrieve the N50, L50, N90 and L90 values by indexing input multi-fasta files
sanger_analysis_pipeline
x86-64 Pipeline used to trim and combine sanger raw data to retrieve a consesus read and other results
split_multi_fasta
GUI that splits a multi fasta file into single fasta files
tabtk
Toolkit for processing TAB-delimited format
ytconverter
simple command line tool to download video to mp3 from youtube