Cannot use disease_normalizer without setting BIOONTOLOGY_API_KEY
prismofeverything opened this issue · comments
When trying to import harvester/disease_normalizer.py
I get the following error:
In [1]: import disease_normalizer
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
<ipython-input-1-d4ae6bedd91b> in <module>()
----> 1 import disease_normalizer
/Users/rspangler/Code/g2p-aggregator/harvester/disease_normalizer.py in <module>()
11 API_KEY = os.environ.get('BIOONTOLOGY_API_KEY')
12 if not API_KEY:
---> 13 raise ValueError('Please set BIOONTOLOGY_API_KEY in environment')
14
15
ValueError: Please set BIOONTOLOGY_API_KEY in environment
It would be ideal if the tool could be used even if I don't have a BIOONTOLOGY_API_KEY
, as the code uses other sources to find matches as well.