OHBA Analysis Group

HMM-MAR

Toolbox for segmentation and characterisation of transient connectivity

osl-dynamics

Methods for studying dynamic functional brain activity in neuroimaging data.

osl

OHBA Software Library - MEG/EEG Analysis Tools

osl-core

Matlab tools for running M/EEG analyses - NO LONGER SUPPORTED - Please use Python Version Instead: https://github.com/OHBA-analysis/osl

Quinn2018_TaskHMM

Task-Evoked Dynamic Network Analysis through Hidden Markov Modelling

MEG-ROI-nets

Stationary network analysis for MEG

Quinn2021_Waveform

Analysis scripts accompanying "Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics" https://doi.org/10.1101/2021.04.12.439547

GLEAN

Group Level Exploratory Analysis of Networks

Quinn2019_BurstHMM

Transient event detection with Hidden Markov Models

abeysuriya_wc_isp

Code for Abeysuriya et al. "A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks"

bayes_tutorial

OHBA Bayes GLM tutorial

Quinn2022_GLMSpectrum

Higgins2020_Neuron

This repository contains all the files used for the analysis in the paper "Replay bursts in humans coincide with activation of the default mode and parietal alpha networks", Higgins et al Neuron 2020

Cho2024_MEEG_RSN

emd-mirror

Mirror repository for EMD package: issue-tracking and development happens at https://gitlab.com/emd-dev/emd

Gohil2024_NetworkAnalysisOfTaskData

Example scripts for Gohil et al., "Dynamic Network Analysis of Electrophysiological Task Data" (2024).

ohba-external

External libraries used by OSL and related OHBA software

parcellations

A collection of parcellations

RepresentationalDynamicsModelling

Tinda

Temporal-Interval Network Density Analysis

Huang2024_ModelVariabilityWithEmbeddings

Scripts for the "Modelling subject variability in dynamic functional brain networks using embeddings" manuscript

OHBA-analysis.github.io

osl-docs

Documentation for Matlab OSL - NO LONGER SUPPORTED - Please use Python version instead: https://github.com/OHBA-analysis/osl

Kohl2023_PD_HMM

meg-simulation

Scripts to simulate MEG data

OHBA-Examples

Example scripts used by OHBA

ohba_maxfilter

Python tool for batch processing Megin Maxfilter processing on fif MEG files

ohba_meg_qc

Python tool for generating quality check reports from MEG recordings

osl-stats

Tools for performing statistical significance testing.

Trubshaw2024_NeurodegenerativeDisorders

Analysis scripts for reproducing the results in (Trubshaw, 2024).