Dishing artifact and value shift with FanBeamGeometry
Cs-Olasz opened this issue · comments
Dear Developers and users of ODL,
I started with the example code of https://github.com/odlgroup/odl/blob/master/examples/tomo/filtered_backprojection_cone_2d.py. I can run it without error now and the result that I get is also as it should be. But after some changes in the code the result I get has a dishing artifact and a shift in the intensity values. Do you have any idea why I getting this values?
About the changes I made: basically, I just want to run the code with a loaded image. And as my test image has a size of 512x512 I made adjustment regarding the geometry.
Note, that if I use the Shepp-logan phantom instead of mine, then it seems working fine.
Thank you in advance for the answers!
Regards,
Csaba Olasz
Source code:
import numpy as np
import odl
import tifffile
recon_size = [512, 512]
reco_space = odl.uniform_discr([-recon_size[0] / 2, -recon_size[1] / 2],
[recon_size[0] / 2, recon_size[1] / 2],
recon_size, dtype='float32')
angle_partition = odl.uniform_partition(0, 2 * np.pi, 360)
detector_partition = odl.uniform_partition(-500, 500, 1000, 1)
geometry = odl.tomo.FanBeamGeometry(
angle_partition, detector_partition, src_radius=500, det_radius=400)
ray_trafo = odl.tomo.RayTransform(reco_space, geometry, impl='astra_cuda')
fbp = odl.tomo.fbp_op(ray_trafo, filter_type='Ram-Lak', frequency_scaling=0.8)
""" phantom = odl.phantom.shepp_logan(reco_space, modified=True)"""
phantom = tifffile.imread('cylinder_slice.tif')
phantom = reco_space.element(phantom)
proj_data = ray_trafo(phantom)
fbp_reconstruction = fbp(proj_data)
tifffile.imwrite('rec_cylinder.tif', fbp_reconstruction)
phantom.show(title='Phantom')
proj_data.show(title='Projection Data (Sinogram)')
fbp_reconstruction.show(title='Filtered Back-projection')
(phantom - fbp_reconstruction).show(title='Error', force_show=True)