New York Structural Biology Center / SEMC's repositories
Anisotropy
These are programs that deal with anisotropy (both resolution and sampling)
appion-protomo
A Docker-based distribution of Appion-Protomo.
leginon-tutorial
Docker image for leginon with simulated data for tutorial purpose
ansible-role-nvidia-driver
Fork of NVIDIA Ansible role w/ added support for Debian.
fscupload
Use a Django web application to calculate a 3D Fourier shell correlation remotely.
image-folder-shrink
Data reduction script invoked by retentioner via the imshrink function.
imod_singularity
A singularity container for IMOD.
motioncor2-docker
Instructions for building a CUDA 8.0-enabled Docker container to run MotionCor2_1.1.0.
ptolemy
Public release of Ptolemy package for automated targeting of Cryo-EM grids
redmine2github
Scripts to migrate redmine tickets to github issues
SpotitonTR
Code for Spotiton Time Resolve experiments
topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples
appion-slurm
Fork of Appion that consists of the minimum needed for everyday operations at SEMC.
SEMCf
Python code facility monitor system (temperatures, etc).
Tilted-Collection
Tilted Single-Particle CryoEM Data Collection
xmipp
Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.
xmippCore
Core functions for Xmipp and sharing with other packages (like Scipion)