Giters

nsheff / LOLA

Locus Overlap Analysis: Enrichment of Genomic Ranges

Home Page:http://code.databio.org/LOLA

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

hg38 database

sb5169 opened this issue · comments

commented

Hi,
I think I read somewhere that hg38 is available but when I download your package and run dbPath = system.file("extdata", "hg38", package="LOLA") gives me an empty variable when I checked the extdata directory its also not there. Can you add it to your package?

commented

Hit,
The real databases are too large to be included as external data files within the package. you have to download them separately. all genome builds are included in the same database files. please see the documentation:

http://code.databio.org/LOLA/
http://databio.org/regiondb
http://cloud.databio.org/regiondb/