Chiara Rasi's repositories
cgbeacon
Instructions and files to set up an Elixir-based beacon connected to a MySQL database.
cgbeacon_UI
Flask app handling variant queries to the Clinical Genomics Beacon
cgmatch
An interface to a custom Matchmaker Exchange node at Clinical Genomics.
cgmatch-1
Add patient data to a matchmaker exchange node and shows patient matching with test queries
cosmic2bed
Convert TSV COSMIC format to bed file
d4-format
The D4 Quantitative Data Format
discover-flask
Full Stack Web Development with Flask.
easyauth
Create a centralized Authentication and Authorization token server. Easily secure FastAPI endpoints based on Users, Groups, Roles or Permissions with very little database usage.
Exomiser
A Tool to Annotate and Prioritize Exome Variants
flask-ldap3-login
LDAP3 Logins for Flask/Flask-Login
flask-ldapconn
Flask extension providing python-ldap3 connection and ORM for accessing LDAP servers.
github-changelog-generator
Automatically generate change log from your tags, issues, labels and pull requests on GitHub.
grafana
The tool for beautiful monitoring and metric analytics & dashboards for Graphite, InfluxDB & Prometheus & More
jwt-auth-proxy
A lightweight JWT authentication proxy written in Go designed for use in Docker/Kubernetes environments.
jwtester
A simple JWT Tester server
mme-apis
Documentation for the MatchmakerExchange APIs
mongo-replica-set
A replica set of MongoDB in Docker Container
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
mutacc
Mutation accumulation in a genomic background of reference samples
patientMatcher
A MatchMaker Exchange server
perl_scripts
A collection of perl scripts. Mostly used for parsing array-cgh data
python-vulture-action
Run Vulture on your Python codebase to identify dead code.
RaukR-2019
RaukR 2019 teaching materials
reference-server
A simple Flask server that implements the Matchmaker Exchange API
sqla_tutorial
Introduction to SQLAlchemy 2020