nknowlton

adaptive_color_deconvolution

adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"

bioinformatics-containers

BioMolecular-Frontiers.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

blog

Musings on R, C++ and otherwise.

chipimputation

Genotype Imputation Pipeline for H3Africa

Deeplearning-digital-pathology

Full package for applying deep learning to virtual slides.

DockerKeras

I provide GPU-enabled docker images including Keras, TensorFlow, CNTK, MXNET and Theano.

electronjs.org

Electron website

embryovision

FrozenCookies

An automated Cookie Clicker tool.

gatsby-starter-gcn

grayscale-theme

Jekyll theme based on Grayscale Start Bootstrap theme

ICARUS

Interactive single cell RNA-seq analysis webserver!

image_classification

Deep Learning implementation using TensorFlow for Image Classification

impute-me

This is the code behind the www.impute.me site. It contains algorithms for imputing personal genomes, as well as a range of custom-made analysis for genetics-based disease and health.

jmcglone.github.io

Data for jmcglone.com. Includes customization of Bootstrap 3.0. Blog and pages generated by Jekyll. Hosted on GitHub.

kallisto

Kallisto Docker

minima

Minima is a one-size-fits-all Jekyll theme for writers.

MLJ.jl

A Julia machine learning framework

MOTIVE

MOTIVE web application

nknowlton.github.io

Web Host for Shiny Project Work

one-click-hugo-cms

pipeline-dev

singularity

Singularity files, mostly just pulling from docker

singularity_files

Repo of singularity image recipe files

SlideSeg

A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.

STORK

Thesis-Webapps

wally

The Flash(ing tool)

yolov3-tf2

YoloV3 Implemented in Tensorflow 2.0