nitrogenase

bayesian-neural-network-blogpost

Building a Bayesian deep learning classifier

bbcontacts

Prediction of beta-strand pairing from direct coupling patterns

binf-scripts

A collection of useful bioinformatics scripts.

CCMpredPy_master

Python implementation of the CCMpred predictor of residue-residue contacts.

ConcreteDropout

Code for Concrete Dropout as presented in https://arxiv.org/abs/1705.07832

contact-vis

Python package for simple protein residue-residue contact map plotting.

contact_prediction

collection of general scripts

DropoutUncertaintyExps

Experiments used in "Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learning"

example-project

Example Python DS project

GaussDCA

Python implementation of GaussDCA using Cython.

How-to-Grow-Neat-Software-Architecture-out-of-Jupyter-Notebooks

Growing the code out of your notebooks - the right way.

NN_calibration

Calibration of Convolutional Neural Networks

notes-on-python-tricks-the-book

Notes I took while reading 'Python Tricks: The Book. A Buffet of Awesome Python Features'

pcons-fold

Pipeline for protein folding using PconsC and Rosetta

persistent-vi

Variational Bayes for discrete undirected models

plmDCA

Porter5

Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

rgn

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

SBioA

An introduction to Structural Bioinformatics Algorithms and scientific computing using Python/PyMOL

stanford-cs-229-machine-learning

VIP cheatsheets for Stanford's CS 229 Machine Learning

VAE_protein_function

Protein function prediction using a variational autoencoder