nilseling

Thesis

Latex scripts to compile my PhD thesis

GithubTest

Test repository for Github teaching

MultiplexedImageAnalysis2023

BASiCS

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

bbRtools

R tools for the Bodenmiller lab

Bioc_image_tests

Random scripts to test handling of bioimage file formats as part of Bioconductor.

BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

BTM

Teaching material for BTM 2016

CATALYST

Cytometry dATa anALYsis Tools

CommonResources

Common lab resources for processing sequencing data

MultiplexedImageAnalysis2022

This repository hosts the scripts to reproduce the analysis presented in the practical session of "Tumors and the immune system 2022 - High dimensional spatial profiling of tumor microenvironment"

my_cellprofiler

neighbouRhood

Adds an R implementation for the HistoCAT neightbourhood analysis that runs from CellProfiler output.

nilseling

nilseling.github.io

My personal website at https://nilseling.github.io/

useR2021_cytomapper

Repository containing the cytomapper slides presented at useR! 2021