nicolas-bertin

CAGEscan-Clustering

Create CAGEscan clusters from CAGE paired-end reads

bedtools-pairedBamToBed12

A powerful toolset for genome arithmetic.

bamUtil

BreastCancerSomaticMutation_vs_ChromatinInteraction

Deorphanizing gene-distal non-coding cancer-associated somatic mutations with chromatin interactions in breast cancer

d3plus

Visualization utility

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

dev-setup

Mac OS X development environment setup: Easy-to-understand instructions with automated setup scripts for developer tools like Vim, Sublime Text, Bash, iTerm, Python data analysis, Spark, Hadoop MapReduce, AWS, Heroku, JavaScript web development, Android development, common data stores, and dev-based OS X defaults.

dockerize

Utility to simplify running applications in docker containers

effective-computing

Effective Computing—Resources for Computational Biologists

zenbu-docker

gnomadjs

JavaScript tools for exploring variant data

hail-on-EMR

EMR cluster creation and Hail 0.2 installation

imputationserver

Michigan Imputation Server: Next-generation genotype imputation service and methods

lamp

LAMP base docker image

libStatGen

Useful set of classes for creating statistical genetic programs.

rpd-sg10k-grch38-gatk4-gvcf-freebayes-vcf

Main genome analytics workflow powering the production analysis of WGS samples for the Singapore NPM Program Phase 1A (AKA SG10K Health)