nick-robo / scHOT

scHOT: single-cell higher order testing

Installation

scHOT is available as a Bioconductor package

For the latest version, install the following packages using BiocManager:

# install.packages("BiocManager")
BiocManager::install(c("S4Vectors", "SummarizedExperiment", "SingleCellExperiment", 
"Matrix", "IRanges", "BiocParallel", "reshape", "ggplot2", "igraph", "grDevices", "ggforce"))

Then install the latest version of scHOT using devtools:

library(devtools)
devtools::install_github("shazanfar/scHOT")

Vignette

You can find the latest vignette at this website: https://shazanfar.github.io/scHOT/.

Contact

shila.ghazanfar <at> sydney.edu.au