Error with ex_createAnno.R script
Troyee13 opened this issue · comments
Hello,
When I am trying to build the Anno data with the following command
Rscript ex_createAnno.R hg38_clean_cDNA.fa hg38.txAnno.RData
I am getting an error
Error: unexpected '<' in "<"
Execution halted
Done!
Any suggestion on how to resolve this issue?
Hi @Troyee13,
Thank you for using FuSeq.
I haven't got this issue before, can you let me know the exact hg38 annotation version you are using?
Best,
Nghia
Thanks for the reply.
The error was because I didn't put excreate_Anno.R not within the R folder of FuSeq. Now it is running fine. I am using Ensembl version 104 annotation right now. I will be closing this issue.