nf-core / raredisease

Call and score variants from WGS/WES of rare disease patients.

Home Page:https://nf-co.re/raredisease

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Add optional trimming of fastq files

jemten opened this issue · comments

Description of feature

When running low input libraries we are having issues with overrepresentation of polyG sequences in the data coming from the NovaseqX instrument. A possible solution is to include an optional trimming of fastq files with fastp.