Error executing process > 'combine_mates'

[tim4berg]

Hi,

I have already read about issue #45 and #83, but unfortunately still receive the following error message. I use quotes to define the input path as well as the valid endings _R1/_R2.

I used the following input parameters

Any idea on what causes this error?

I also noticed that even though I defined the R1\R2 file in the input, only the R1 file is shown as input in the Core Nextflow options when starting Nextflow

Thanks a lot in advance!

[Nicolas Servant]

Hi,
Sorry for the delay. Which version are you using ? could you show me your samplesheet please ?

[tim4berg]

Thanks for your reply, but the pipeline version 1.3.0 is running now :)
For some reason it does not work when I call the input files by using /AS-954081-LR-_R{1,2}.fastq.gz as I did in my first post. Even though, it is the same call as mentioned in the example on the website.
Instead, it seems to work with /{1,2}.fastq.gz