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nf-core / chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

Home Page:https://nf-co.re/chipseq

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Improve website on parameters section Alignment Options for argument --save_unaligned

aghr opened this issue · comments

commented

Description of feature

The description of parameter --save_unaligned reads: "Where possible, save unaligned reads from either STAR, HISAT2 or Salmon to the results directory." but if I got it right then does the pipeline offer mappers BWA, Bowtie2, and STAR, but not HISAT2 nor Salmon.