Error running the pipline test in the BWA index step
Alhajuji opened this issue · comments
Alhajuji commented
Description of the bug
Running the tests for my pipeline gave an error in the BWA index step.
Command used and terminal output
I run this command:
nextflow run nf-core/chipseq -profile test,docker --outdir
I had this error:
-[nf-core/chipseq] Pipeline completed with errors-
ERROR ~ Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:PREPARE_GENOME:BWA_INDEX (genome.fa)'
Caused by:
Missing output file(s) `bwa` expected by process `NFCORE_CHIPSEQ:CHIPSEQ:PREPARE_GENOME:BWA_INDEX (genome.fa)`
Command executed:
mkdir bwa
bwa \
index \
\
-p bwa/genome \
genome.fa
cat <<-END_VERSIONS > versions.yml
"NFCORE_CHIPSEQ:CHIPSEQ:PREPARE_GENOME:BWA_INDEX":
bwa: $(echo $(bwa 2>&1) | sed 's/^.*Version: //; s/Contact:.*$//')
END_VERSIONS
Command exit status:
0
Command output:
(empty)
Command error:
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
Work dir:
/Users/aa/Chip/nfcore/work/8d/a6f9cdb081d96f0ce078bf954a2304
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
-- Check '.nextflow.log' file for details
Relevant files
No response
System information
No response