Default values for p-value and FDR

[Amila Beganovic]

Description of feature

Hi everyone,

I am trying to find the default values for p-value and FDR when the pipeline does peak calling with MACS2. In the latest version, they are both set to "null", but I think there should be also somewhere reported default values. Anyone has any idea about this?

Thank you in advance!

[Jose Espinosa-Carrasco]

They don't have any default value, if either macs_fdr or macs_pvalue are not provided by the user then these arguments are not passed to the macs2 command, see here.

[Jose Espinosa-Carrasco]

I will close this issue now for lack of activity, if you have any further questions please feel free to re-open it.