MACS2 steps did not carried out
wook2014 opened this issue · comments
Description of the bug
I have run chipseq workflow and I can not find the MACS2 result. I have checked the log file and it seemed that the steps after deeptools did not executed.
Command used and terminal output
nextflow run ~/chipseq/nf-core-chipseq-2.0.0/workflow/ -profile singularity --input ~/chipseq/data/chipseq.csv --outdir ~/chipseq/res --fasta ~/GRCh38/GRCh38_genomic.fna --gff ~/GRCh38/GRCh38_genomic.gff --bowtie2_index ~/GRCh38/bowtie2 --gtf ~/GRCh38/GRCh38_genomic.gtf --read_length 150 --macs_gsize 2875000000 --aligner bowtie2
Relevant files
System information
Nextflow version ( 22.10.6 build 5843 )
Hardware ( HPC )
Executor ( pbs )
Container engine: ( Singularity )
OS ( Linux 3.10.0-862.el7.x86_64 )
Version of nf-core/chipseq ( 2.0.0)